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Tag Archives: NumPy
There’s so much genomic data that we hardly know what to do with it all
One of the things that falls out of our genomic evaluation system are breeding values for individual chromosomes for each trait evaluated. For the past few days I’ve been thinking about how to compare the genetic covariance matrices that we … Continue reading
Posted in Articles
Tagged covariance matrices, genetic markers, genomic evaluation, NumPy, PyTables, Python
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Sage Makes Me Happier Than Seems Reasonable
I’ve known about the Python-for-mathematics software stack SAGE for a while now, but I hadn’t played with it until today. What happened? I read Vincent Noel’s very good blog entry on replacing Matlab with Python. What I had missed about … Continue reading
[PyPedal] NumPy, new methods, pyp_metrics
This moring I thought that I woud spend an hour or so tidying up a few corners in PyPedal and making a small extension to pyp_metrics/mating_coi() to add a feature of interest to a potential user. By the time the … Continue reading